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In honor of Thomas Paine and other Founders & Immigrants. In memory of my daddy Horst Bingel and my mom Irma Bingel
Showing posts with label GPU. Show all posts
Showing posts with label GPU. Show all posts
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Monday, September 17, 2018
Secondary Genome Analysis In Under 1 Hour!
Posted: 9/17/2018
Today (9/17/2018) I read this news release from Nvidia: What’s in Your Genome? Startup Speeds DNA Analysis with GPUs
Quotes (emphasis added):
- “Now, the bottleneck for genomic insights is the computational analysis that follows sequencing. It’s the process of detecting key markers and outliers, called variants, in the genetic data.”
- “Parabricks, a startup based in Ann Arbor, Mich., and NVIDIA Inception member, is shrinking the time this analysis takes from a couple days to under an hour. “It’s the first application for secondary analysis of genomic data on a GPU, and it fully matches the state-of-the-art analytical pipeline,” …”
- “... Running on a single NVIDIA DGX-1 server, Parabricks’ software can process more than 12,000 whole genomes per year ...”
Very impressive!
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